ViPs   -   Viral    Protein   Structure   resource


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Help for Search

Structure Map:          
Visualize structure map of virus by providing its NCBI Genome Id. (Eg: NC_006152)

PDB Id:          
Search based on PDB id. (Eg: 1A3R)

Source:           
Search based on source of protein ie;      virus/genus/family/group name. (Eg: Retroviridae/Human Immunodeficiency Virus 1)

Taxon Id:        
Search based NCBI taxonomy id of source organism. (Eg: 11676)

Genome Id:   
Search based on NCBI genome id. (Eg: NC_001802 )

Host:              
Search based on host of virus. (Eg: Homo sapiens)

Protein:          
Search based on protein name or fragment. (Eg: Envelope/ Env/ Gag)

Function:        
Search based on function of protein. GO id should be used. (Eg: 16564/ 16032)

Virion:            
Search based on virus component. GO id should be used. (Eg: 19030 )

Pfam:             
Search based on PFAM id/accession. (Eg: PF00509 / Hemagglutinin )

Scop:            
Search based on SCOP id/domain/fold. (Eg: 23798 / Hemagglutinin)

Cath:              
Search based on CATH id. (Eg: 1.10.530.40 )

Resolution:            
Give the range of resolution as shown in example. ( Eg: 0.5-1)

ViPs Statistics

The table shows distribution of structures in ViPs according to seven major class of virus.

Class Name No. of Structures
dsDNA Viruses, No RNA Stage 1745
dsRNA Viruses 126
Retro-Transcribing Viruses 1184
ssDNA Viruses 97
ssRNA Viruses 1361
Satellites 5
Unclassified Phages 16
stats