ViPs   -   Viral    Protein   Structure   resource

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For help see below

Help for Search

Structure Map:          
Visualize structure map of virus by providing its NCBI Genome Id. (Eg: NC_006152)

PDB Id:          
Search based on PDB id. (Eg: 1A3R)

Source:           
Search based on source of protein ie;      virus/genus/family/group name. (Eg: Retroviridae/Human Immunodeficiency Virus 1)

Taxon Id:        
Search based NCBI taxonomy id of source organism. (Eg: 11676)

Genome Id:   
Search based on NCBI genome id. (Eg: NC_001802 )

Host:              
Search based on host of virus. (Eg: Homo sapiens)

Protein:          
Search based on protein name or fragment. (Eg: Envelope/ Env/ Gag)

Function:        
Search based on function of protein. GO id should be used. (Eg: 16564/ 16032)

Virion:            
Search based on virus component. GO id should be used. (Eg: 19030 )

Pfam:             
Search based on PFAM id/accession. (Eg: PF00509 / Hemagglutinin )

Scop:            
Search based on SCOP id/domain/fold. (Eg: 23798 / Hemagglutinin)

Cath:              
Search based on CATH id. (Eg: 1.10.530.40 )

Resolution:            
Give the range of resolution as shown in example. ( Eg: 0.5-1)

ViPs Statistics

The table shows distribution of structures in ViPs according to the families of virus.

Virus Family No. of Structures
Adenoviridae69
Arenaviridae16
Arteriviridae8
Asfarviridae2
Astroviridae3
Baculoviridae14
Bicaudaviridae1
Birnaviridae22
Bornaviridae3
Bromoviridae8
Bunyaviridae15
Caliciviridae57
Caulimoviridae2
Circoviridae2
Closteroviridae1
Coronaviridae186
Corticoviridae4
Cystoviridae24
Dicistroviridae2
Filoviridae21
Flaviviridae310
Fuselloviridae7
Geminiviridae2
Globuloviridae5
Hepadnaviridae6
Hepeviridae7
Herpesviridae152
Inoviridae42
Iridoviridae2
Leviviridae56
Lipothrixviridae12
Microviridae9
Mimiviridae37
Myoviridae887
Nanoviridae1
Nimaviridae5
Nodaviridae12
Orthomyxoviridae282
Papillomaviridae51
Paramyxoviridae63
Partitiviridae2
Parvoviridae42
Phycodnaviridae30
Picobirnaviridae1
Picornaviridae208
Podoviridae189
Polydnaviridae2
Polyomaviridae37
Potyviridae5
Poxviridae99
Reoviridae88
Retroviridae1176
Rhabdoviridae25
Rudiviridae10
Secoviridae13
Siphoviridae169
Tectiviridae14
Tetraviridae2
Togaviridae40
Tombusviridae8
Totiviridae1
Tymoviridae10
Virgaviridae9