ViPs   -   Viral    Protein   Structure   resource


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For help see below

Help for Search

Structure Map:          
Visualize structure map of virus by providing its NCBI Genome Id. (Eg: NC_006152)

PDB Id:          
Search based on PDB id. (Eg: 1A3R)

Source:           
Search based on source of protein ie;      virus/genus/family/group name. (Eg: Retroviridae/Human Immunodeficiency Virus 1)

Taxon Id:        
Search based NCBI taxonomy id of source organism. (Eg: 11676)

Genome Id:   
Search based on NCBI genome id. (Eg: NC_001802 )

Host:              
Search based on host of virus. (Eg: Homo sapiens)

Protein:          
Search based on protein name or fragment. (Eg: Envelope/ Env/ Gag)

Function:        
Search based on function of protein. GO id should be used. (Eg: 16564/ 16032)

Virion:            
Search based on virus component. GO id should be used. (Eg: 19030 )

Pfam:             
Search based on PFAM id/accession. (Eg: PF00509 / Hemagglutinin )

Scop:            
Search based on SCOP id/domain/fold. (Eg: 23798 / Hemagglutinin)

Cath:              
Search based on CATH id. (Eg: 1.10.530.40 )

Resolution:            
Give the range of resolution as shown in example. ( Eg: 0.5-1)

ViPs Statistics

The table shows structure distribution according to experimental method.

Resolution(A) No. of Structures
0.0 - 0.5 0
0.5 - 1.0 10
1.0 - 1.5 193
1.5 - 2.0 1086
2.0 - 2.5 1107
2.5 - 3.0 825
3.0 - 3.5 362
3.5 - 4.0 84
4.0 - 4.5 12
4.5 - 5.0 4
5.0 - 5.5 7
5.5 - 6.0 1
6.0 - 6.5 1
6.5 - 7.0 1
7.0 - 7.5 2
stats