ViPs   -   Viral    Protein   Structure   resource

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Help for Search
Structure Map:          
Visualize structure map of virus by providing its NCBI Genome Id. (Eg: NC_006152)

PDB Id:          
Search based on PDB id. (Eg: 1A3R)

Source:           
Search based on source of protein ie;      virus/genus/family/group name. (Eg: Retroviridae/Human Immunodeficiency Virus 1)

Taxon Id:        
Search based NCBI taxonomy id of source organism. (Eg: 11676)

Genome Id:   
Search based on NCBI genome id. (Eg: NC_001802 )

Host:              
Search based on host of virus. (Eg: Homo sapiens)

Protein:          
Search based on protein name or fragment. (Eg: Envelope/ Env/ Gag)

Function:        
Search based on function of protein. GO id should be used. (Eg: 16564/ 16032)

Virion:            
Search based on virus component. GO id should be used. (Eg: 19030 )

Pfam:             
Search based on PFAM id/accession. (Eg: PF00509 / Hemagglutinin )

Scop:            
Search based on SCOP id/domain/fold. (Eg: 23798 / Hemagglutinin)

Cath:              
Search based on CATH id. (Eg: 1.10.530.40 )

Resolution:            
Give the range of resolution as shown in example. ( Eg: 0.5-1)

ViPs Statistics

Structure Distribution Among Seven Virus Classes Table Graph
Structure Distribution Among Virus Families TableGraph
Structure Distribution Among Source Organism TableGraph
Structural Coverage(%) For Each Source Organism TableGraph
Experimental Methods TableGraph
X-ray Resolution TableGraph
BlastClust Clusters (Redundancy) TableGraph
Other Important Information Table